Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015802680.1_cds_XP_016480523.1_7158
CDS Infomation

[gene=LOC107801659] [db_xref=GeneID:107801659] [protein=alanine--tRNA ligase, chloroplastic/mitochondrial-like isoform X3] [protein_id=XP_016480523.1] [location=join(15868..15900,16990..17168,17649..17727,18372..18506,18668..18817,19003..19113,19221..20138,20352..20624,20878..21087,21474..21631,21982..22309)] [gbkey=CDS]
Sequence

ATGCTTCAGTTCAAGCCTATATTCCTTGGAAAGGTACCGAGGGAAGTGCCTAGCGCAGCT
ACTTCTCAGAAATGCATCCGGACAAATGATATTGAGAATGTGGGTCGAACATCCCGACAT
CAGACATTCTTTGAGATGCTTGGAAATTTTAGTTTTGGAGATTATTTTAAAAAAGAAGCT
ATTAAGTGGGCATGGGAGCTCTCCACCTCAGAATATGGACTCCCAGCTGATAAATTATGG
ATTAGTGTTTACCAAGATGATGATGAAACTTTTGCACTATGGCATGATGAGATAGGTGTT
CCTAAAGAGCGAATAATAAGACTCGGAGAAGATGACAACTTCTGGACAAGTGGAGCTACT
GGTCCGTGTGGTCCATGCTCTGAAATTTATTACGATTTTCATCCCGGGAGGGGCACTTCC
AATGTTGATCTTGGAGATGATACAAGATTTATAGAGTTCTACAACCTTGTTTTTATGCAA
TACAATAAGAAGGATGATGGTTCACTTGAGCCTTTAAAGCAAAAGAATATAGATACTGGA
CTTGGTTTAGAGCGTATGGCCAGGATTCTGCAGAAGGTCCCCAACAATTACGAAACCGAC
TTAATATTTCCCATCATAGAGAAGGCTGCAGAATTGGCAAATGTCTCATATGCTCTTGCA
GATGATTCTACAAAAACAAAGCTTAAGATAATTGGAGATCATATGCGTGCAGTTGTTTAT
CTGATATCTGATGGTGTCAACCCATCAAATATTGGGAGGGGGTATGTGGTACGTCGCCTC
ATTAGAAGGGTTGTTCGAACAGGCAGGTTACTTGGTGTAAAGGGAGATGGGATGGGTGAT
CTTCAAGGAGCATTTTTGCCGATACTTGCTAAAAAGGTGATTCAACTAAGCACCAATATA
GATGCTGATGTGAAAACCAGAGCATCCCGCATACTTGAGGAATTGAAAAGAGAGGAGCTT
CGTTTTGTTTTGACTCTAGAAAGGGGAGAAAAACTTCTTGACCAGATGCTGGCAGATGCA
TTATTAAATGCCCAGGGAACTGAGACTGCACCTTGTCTGTCGGGGAAGGATGCATTCGTA
TTGTATGACACCTATGGATTTCCAGTGGAGATAACAAACGAAGTTGCTGAAGAACGTGGA
ATCAGTATAGATATGAATAGCTTTGACATAGAAATGGAGAAGCAAAGACAGCTATCTCAG
GCTGCACATGATACTGTTAAACTAGGAGTTGAAAATGGTGCAAACCTTGCTGAAGATATT
CCTGATACTGAGTTTCTTGGCTACAATACTCTCCGTTCCAAGGCAGTGGTTGAGGGTTTG
TTGGTAAATGGTAGTCCTGTAGCACAAGTCTCCAAAGGAAGTGAAGTGGAAATTTTGCTG
AACAGGACTCCATTTTATGCTGAGTCAGGAGGCCAAATTGGGGATAACGGTTTTTTATAT
ATGATGGAGGCTGAAAATGAACAGCCAGCCATTGTAGAGATAAAAGACGTCCAAAAATCT
ATGGGTAATATATTCGTTCACAAAGGGACAATTACAGAAGGTATGATAGAGGTCGGCCGA
GAAGTAGAAGCGGCTGTTGATCCAAACTTGAGGCAACGGGCTAAGGTTCACCATACAGCT
ACTCATTTACTTCAATCAGCACTCAAAAGAGTAATTGGTCAGGAAACATCTCAAGCAGGA
TCGTTGGTTGCTTTTGATCGTCTTAGATTTGACTTCAACTTCCATCGGCCTCTTCAAGAC
AAGGAACTTGTTGAAATTGAAGGTTTGATCAACCAATGGATTGGCGATGCCGCGATTCTG
GAAACGAAAGTCATGTCTCTGACTGATGCAAAAAGAGATGGGGCAATCGCAATGTTTGGA
GAAAAATATGGAGAACAGGTACGTGTAGTCGAGGTTCCTGGCGTATCAATGGAATTATGT
GGTGGCACCCATGTAAGCAATACTGCTGAGATACGTGGATTCAAAATCATATCTGAACAG
GGCATTGCATCAGGAGTTAGGCGAATTGAAGCTGTAGCTGGAGATGCTTTCATTGAATAT
GTCCTTACGAGAGATAACTACATGAAGCAGCTATGCTCCACTCTCAAAGTAAAAGCTGAA
GAAGTAACTGGCAGGGTAGGCGGACTTTTGGAAGAACTACGATTGACAAGAAATGAAGTT
TCGGCTGCTCGGGCAAAAGCAGCAATCTATAAGGCATCAACACTTTCTAGCAGAGCATCT
ACCATTGGAACTTCAAAAAATATTAGGCTCCTAGTTGAGTCCATGGATGATGTCGATGCT
GATTCACTCAAGAGTGCGGCAGAATATCTTGTAGATTTGTTGAAAGATCCGGCAGCTGTG
GTTCTAGGATCATGCCCAGGAGATGGAAAAGTTAGCCTTGTCGTTGCATTAACCCCTGGA
GTTGTTGATCTTGGAATTAAAGCTGGTGACATTATAAAGCCTCTAGCTAAATCATGTGGT
GGTGGAGGGGGTGGTCGACCTAATTTTGCTCAGGCAGGTGGGAGGAAACCAGAGAACTTG
TTAGGTGCACTTGAAGAAGCTCGAGAACAGCTTAAAAAGCTGCTTGAAAAGTGA

Peptide Sequence

PEP ID

XP_016480523.1
PEP Infomation

PREDICTED: alanine--tRNA ligase, chloroplastic/mitochondrial-like isoform X3 [Nicotiana tabacum]
Sequence

MLQFKPIFLGKVPREVPSAATSQKCIRTNDIENVGRTSRHQTFFEMLGNFSFGDYFKKEA
IKWAWELSTSEYGLPADKLWISVYQDDDETFALWHDEIGVPKERIIRLGEDDNFWTSGAT
GPCGPCSEIYYDFHPGRGTSNVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTG
LGLERMARILQKVPNNYETDLIFPIIEKAAELANVSYALADDSTKTKLKIIGDHMRAVVY
LISDGVNPSNIGRGYVVRRLIRRVVRTGRLLGVKGDGMGDLQGAFLPILAKKVIQLSTNI
DADVKTRASRILEELKREELRFVLTLERGEKLLDQMLADALLNAQGTETAPCLSGKDAFV
LYDTYGFPVEITNEVAEERGISIDMNSFDIEMEKQRQLSQAAHDTVKLGVENGANLAEDI
PDTEFLGYNTLRSKAVVEGLLVNGSPVAQVSKGSEVEILLNRTPFYAESGGQIGDNGFLY
MMEAENEQPAIVEIKDVQKSMGNIFVHKGTITEGMIEVGREVEAAVDPNLRQRAKVHHTA
THLLQSALKRVIGQETSQAGSLVAFDRLRFDFNFHRPLQDKELVEIEGLINQWIGDAAIL
ETKVMSLTDAKRDGAIAMFGEKYGEQVRVVEVPGVSMELCGGTHVSNTAEIRGFKIISEQ
GIASGVRRIEAVAGDAFIEYVLTRDNYMKQLCSTLKVKAEEVTGRVGGLLEELRLTRNEV
SAARAKAAIYKASTLSSRASTIGTSKNIRLLVESMDDVDADSLKSAAEYLVDLLKDPAAV
VLGSCPGDGKVSLVVALTPGVVDLGIKAGDIIKPLAKSCGGGGGGRPNFAQAGGRKPENL
LGALEEAREQLKKLLEK

Transcript Sequence

Gene sequence data has not been registered.